Sunday, December 17, 2023

Workflows for 2023 HT Yeast Extract Project Phase 1

 Phase 1--December 2023 to May 2024

1A. December 2023 to 12 January 2024

  • Isolate and identify the yeast strain that is nearly identical to that of the Reference Yeast Extract
    • Streak from source for single colonies
      • YPD plates
      • Pick single colony
      • Observe under microscope
      • Grow test-tube cultures in YPD medium aerobically
      • Extract DNA from yeast cells
      • Extract DNA from Reference Yeast Extract
    • Interdelta Fingerprint comparison
      • Observe the patterns of lower bands
    • Nanopore sequencing for WGS
    • DNA sequence comparison-- target >90% similarity
1B. 15 January 2024 to 26 January 2024 
  • Lab-scale fermentor cultivation 
    • Medium follows the previous optimized recipe 
    • 4x500ml fermentors for as many times as needed for >20g of Yeast extract--Need about 10L of culture--5 times
    • Collect yeast cells by centrifugation
    • Pool enough yeast cells
    • Autolysis of yeast cells to make yeast extracts, following the previous optimized treatment conditions
    • Freeze-dry/oven-dry the yeast extract--check with Eliz

1C. 29  Janurary 2024 to 16 February 2024
  • Large lab-scale fermenter cultivation
    • HKPolyU fermenter familiarization
    • HKPolyU fermenter test-runs
    • >50g Yeast extracts production

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